Hex, Bugs and More Physics | Emre S. Tasci

Suppose that I have a web server which consists of two identical computers behind a splitter that distributes the incoming requests made to a shared ip. Furthermore, the central repository is being kept on a different computer and as a final thing, assume that I sometimes use the computer located in my office, and sometimes the computer at my home as indicated in the following diagram:

The red arrows indicate the mercurial transfers. You can see that, the changes are only applied to the servers, i.e., nobody codes directly there (no push, only pulls and ups). My two computers can also be thought of two different developers but that part actually isn’t very relevant to this entry’s message. The thing I want to happen is: whenever I push a change into the central repository, I would like to see that it is applied on the servers. In other words I want the following procedures to be automated after the PC@wherever: hg push operation:

1. PC@wherever: hg com
2. PC@wherever: hg push
3. PC@wherever: ssh CentralRepo
4. CentralRepo: hg up
5. CentralRepo: ssh Server#1
6. Server#1: hg pull
7. Server#1: hg up
8. Server#1: ssh Server#2
9. Server#2: hg pull
10. Server#2: hg up

Even though I’ll be using Mercurial in this entry, SVN implementation is pretty much similar. After all, we’ll be using the so-called hooks, i.e. the procedures that takes place upon a triggered event such as push.

Since we will be automating (and I’ll be using SSH for the communication between the nodes), it is essential that the nodes can communicate freely via the help of the ssh-keys (all the relevant information including the usage of “hg-ssh” can be found in a previous entry titled ‘Accessing Mercurial with limited SSH access using key and hg-ssh’).

The trigger event is the incoming data to the central repository, so we edit the .hg/hgrc file of the project on the central repository and type:

[hooks]
incoming = .hg/incominghook.sh > /dev/null

This hook just tells the mercurial to execute the ‘incominghook.sh’ script in the .hg directory (relative to the project’s root dir) whenever there’s an incoming data (i.e., “a push to this -central- repository). So what it should do? It should ‘hg up’ the central repository, for starters. Then, it should ‘ping’ the two servers so that they also pull and update from the -now up-to-date- central repository. This is what the incoming.sh script looks like:

#!/bin/sh
# Go to the project's dir no matter where you are
cd /path/to/the/project/repository/  

# Update it (since this is the central repo, there is no need to 'pull',
#                everybody is pushing to here)
hg up  

# Connect to the servers using the id files specifically generated for this purpose
# so that, upon connection, filtered by the command option
ssh -i ~/.ssh/id_rsa_specific_id_for_the_project__central_repo server1
ssh -i ~/.ssh/id_rsa_specific_id_for_the_project__central_repo server2

Again, if it is not very clear how will the servers get into action by a mere SSH connection, I do urge you to check the aforementioned entry.

The ~/.ssh/authorized_keys file on server1 contains the following related entry corresponding to the supplied id being used in the connection made from central repo:

command="/home/sururi/bin/hgpull_project_x.sh",
no-port-forwarding,no-X11-forwarding,no-agent-forwarding,no-pty
ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAnq.....==sururi@centralRepo (project X)

So that, when “somebody” connects with the relevant key_id file, the server executes the ‘hgpull_project_x.sh’ (located at /home/sururi/bin/) and returns the output, if any. You can guess that this script actually goes to the project’s location, pulls the changes and then ups it. As is evident from the contents of the ‘hgpull_project_x.sh’ script:

cd /path/to/the/project/on/server1
hg pull --ssh "ssh -i ~/.ssh/id_rsa_specific_id_for_the_project__server1" ssh://sururi@centralrepo//path/to/project
hg up

As you can learn from the strongly referred previous entry, the corresponding line on central repo’s authorized_keys file is something like:

command="hg-ssh /path/to/project/",no-port-forwarding,
no-X11-forwarding,no-agent-forwarding,no-pty ssh-rsa AAAAB...

and we’re done.

Today, I wondered about (actually needed) the possibility to be able to limit (and hence connect afterwards) the access to the repository center of mercurial, using SSH.

To limit an SSH connection, you use ssh-keys: you create a pair of keys, private and public, using the ‘ssh-keygen’ command and then adding the public one to the ~/.ssh/authorized_keys. As an example, consider two computers ‘local’ and ‘remote’ and we want to connect to remote from local without having to enter password every time. So, from the console of local, first I create the key pair:

sururi@local:/tmp/tmp$ ssh-keygen
Generating public/private rsa key pair.
Enter file in which to save the key (/home/sururi/.ssh/id_rsa): ./id_rsa_example
Enter passphrase (empty for no passphrase):
Enter same passphrase again:
Your identification has been saved in ./id_rsa_example.
Your public key has been saved in ./id_rsa_example.pub.
The key fingerprint is:
84:59:8d:8c:43:4a:bc:31:ff:5a:12:23:34:45:56:67 sururi@remote
The key's randomart image is:
+--[ RSA 2048]----+
|   oAE*=A+o      |
|  .o.=..+=..     |
|   .o...         |
|                 |
|        XXX      |
+-----------------+

I didn’t specified any password because I’m intending to have it used automatically (in the hook procedures) and I specified the location of the pair files as the current directory with the names: id_rsa_example  & id_rsa_example.pub

Now, I should append the contents of the ‘id_rsa_example.pub’ file to the ./ssh/authorized_keys at the remote computer. To do this, of course, I should be able to connect it via SSH by normal means. So I execute (from the local computer):

ssh your_username@remote 'cat >> ~/.ssh/authorized_keys' < ./id_rsa_example.pub

And from this moment on -hopefully- you should be able to connect without the remote asking for your password (since we’re not using the default place & filename for the key, i.e. ~/.ssh/id_rsa and ~/.ssh/id_rsa.pub, this newly generated key should be included with the “-i” (identity file) option as in: ssh -i /tmp/tmp/id_rsa_example yourusername:remote)… but, that wasn’t exactly what we wanted. We are thinking of a scenario where you’d like to (semi-)freely distribute the SSH access to the central repository to your developers while making sure that they wouldn’t (couldn’t) do something nasty while they are connected to the remote computer.

We can limit the things an SSH-connected user can do to a single thing via the authorized keys option. Checking this file on the remote computer’s ~/.ssh/authorized_keys file, you should see something like:

ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAnq5rMLnoab+2F28g/nb58RBENWtX395TuyDFsYkalGaZxrziwDoau/wglkU19DbcAVKgw0p6lMEIuh2iALOppRzxrTgFFhJkL1dxzkugbbPEoSWyfrj9FivzpnxHWgRHQApQeWUBOZhroDTURwfqcyC9SW020CR57jLWfgw+idqwtCu+ZBYmEyHSJcZIH2mWXLrUQ8OalxCFVaLKL50Lpc7V8XJPs+Pg6MPVgfDUqMdjrGkAF7j4viOHTjDWP1h4Ngim70dOeyxWtuqbCbxM4APTShaqET42sj1jHxL2m1dJzXX8s/gEdN0O09hZPhI6rlC+ANWIdJ1vJfODMXWaQ== sururi@local

By adding the “command” option to the beginning of this line would make sure that whenever somebody with the corresponding key connects, that command is run automatically, the results passed back and the connection is terminated afterwards. So, far example. modifying the entry upstairs as:

command="date" ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAnq5rMLnoab+2F28g/nb58RBENWtX395TuyDFsYkalGaZxrziwDoau/wglkU19DbcAVKgw0p6lMEIuh2iALOppRzxrTgFFhJkL1dxzkugbbPEoSWyfrj9FivzpnxHWgRHQApQeWUBOZhroDTURwfqcyC9SW020CR57jLWfgw+idqwtCu+ZBYmEyHSJcZIH2mWXLrUQ8OalxCFVaLKL50Lpc7V8XJPs+Pg6MPVgfDUqMdjrGkAF7j4viOHTjDWP1h4Ngim70dOeyxWtuqbCbxM4APTShaqET42sj1jHxL2m1dJzXX8s/gEdN0O09hZPhI6rlC+ANWIdJ1vJfODMXWaQ== sururi@local== sururi@vala

would cause the following behaviour from the remote:

sururi@local:~$ ssh -i /tmp/tmp/id_rsa_example sururi@remote
Sun Aug 28 22:05:54 CEST 2011
Connection to remote closed.

I’m a bit tired now writing in full details, so will skip some obvious things from now on. Mercurial has an SSH-wrapper called ‘hg-ssh’ exactly for this purpose, and you can use it by specifying the paths of the repositories as command arguments as in:

command="hg-ssh /path/to/repository" ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAnq5rMLnoab+2F28g/nb58RBENWtX395TuyDFsYkalGaZxrziwDoau/wglkU19DbcAVKgw0p6lMEIuh2iALOppRzxrTgFFhJkL1dxzkugbbPEoSWyfrj9FivzpnxHWgRHQApQeWUBOZhroDTURwfqcyC9SW020CR57jLWfgw+idqwtCu+ZBYmEyHSJcZIH2mWXLrUQ8OalxCFVaLKL50Lpc7V8XJPs+Pg6MPVgfDUqMdjrGkAF7j4viOHTjDWP1h4Ngim70dOeyxWtuqbCbxM4APTShaqET42sj1jHxL2m1dJzXX8s/gEdN0O09hZPhI6rlC+ANWIdJ1vJfODMXWaQ== sururi@local

(and for more security, I would suggest you include the other options as well, such as:)

command="hg-ssh /path/to/repository",no-port-forwarding,no-X11-forwarding,no-agent-forwarding,no-pty ssh-rsa AAAAB3NzaC1yc2EAAAABIwAAAQEAnq5rMLnoab+2F28g/nb58RBENWtX395TuyDFsYkalGaZxrziwDoau/wglkU19DbcAVKgw0p6lMEIuh2iALOppRzxrTgFFhJkL1dxzkugbbPEoSWyfrj9FivzpnxHWgRHQApQeWUBOZhroDTURwfqcyC9SW020CR57jLWfgw+idqwtCu+ZBYmEyHSJcZIH2mWXLrUQ8OalxCFVaLKL50Lpc7V8XJPs+Pg6MPVgfDUqMdjrGkAF7j4viOHTjDWP1h4Ngim70dOeyxWtuqbCbxM4APTShaqET42sj1jHxL2m1dJzXX8s/gEdN0O09hZPhI6rlC+ANWIdJ1vJfODMXWaQ== sururi@local

and you can pull now on the local computer from the central repository at the remote computer with a command like:

sururi@local:~/project$ hg pull --ssh "ssh -i /tmp/tmp/id_rsa_example" ssh://sururi@remote//path/to/repo
pulling from ssh://sururi@remote//path/to/repo
searching for changes
no changes found

I’ve been using SVN for revision control system for some time. I certainly benefited from it to organize or fall-back to a stable version (“the good old times”) when I was in trouble while I was computing solo but there were two things that always upset me while using it:

• Commiting meant publishing: This issue might be worked around when you have your trunk (we actually have the trunk for the ‘most recent’ status and a ‘released’ branch for the tested and stable programs of that trunk) and each of the developers play in their branches until it looks OK and hence merge it to trunk (and hopefully eventually make it to the ‘released’ branch), but the problem is, most of the time I’m in the middle of the coding process (in my branch) and it would be nice if I didn’t affect the main repository everytime I made a commit (it’s really not very nice) – in other words, even in my branch I would like to save while not making them available. The answer to this lies of course in distributed revision control systems (dvcs).
• Merging: Merging is hell in SVN when you have many developers. Been there, suffered that.

I had heard of git and bazaar but -for some reasons I don’t know why- never had taken the step to give them a try. Very recently, in a scientific gathering, one of the participants suggested me to use mercurial. The interesting thing about this is, he was suggesting it as a means to enable an “undo” option for a -scientifing- refinement program which has the tendency to update your files in according to the changes you applied. I know this sounds natural but when you tried some method and it didn’t worked, you couldn’t go just one step back and use a different method – you have to start from scratch with your initial input file and apply the methods so far but the last consecutively over again. So, my friend was actually recommending me to use a revision control system for the work files (which can be done perfectly well via SVN, by the way) and he happened to be using mercurial. He suggested to check this website by Joel Spolsky (http://hginit.com/) to get it going and the website is very intriguing, indeed. So I have been running some tests to get my feet wet and it was going so well until I found that the log command didn’t reveal the list of the changes made upon the files per changeset (‘revision’ in terms of SVN). I searched and searched and at the end I found the solution on hg tip (http://hgtip.com/tips/advanced/2010-01-15-styling-mercurials-cli/) website by Steve Losh. His ‘Nice Log’ script was exactly what I was looking for plus some additional effective logging templates.

I don’t think for our big project I can make the switch from SVN to Mercurial, but from now on, I’ll be ‘hg init’ing instead of ‘svnadmin create’ing for the projects to come.

Having a personal wiki has its pros and cons with the pros being obvious but, on the other hand, one doesn’t feel like reposting what he has already committed into the corresponding wikipedia entry (and since reposting means filtering out the sensitive information and generalizing it, it is double the effort). So this fact, more or less, explains my absence of activity in this blog for the last 1.5 years. But then, there is one negative aspect of personal wikipedia “blogging” – it’s like putting everything under the rug : you classify the data/information and then you forget that it is there. That’s when “actual” blogging (like this one) comes handy. So, sorry & welcome back..

Today, I’ll present a code that I’ve just written to parse out the compatible paths from a tree. In my case, the three is the list of subgroups with indexes that one can acquire using Bilbao Crystallographic Server’s marvelous SUBGROUPGRAPH tool. For low indexes, you can already have SUBGROUPGRAPH do this for you by specifying your supergroup G, subgroup H and the index [G:H]. For example, for G=136, H=14 and [G:H] = 8, you can have the following paths drawn:

But as I said, things can get rough when you have a high index. In that case, we can (and we will) try to parse and analyze the paths tree which is outputted by SUBGROUPGRAPH when no index is designated, e.g., for G=136, H=14:

Where you see the maximal subgroups for the involved groups and their corresponding indexes. So, to go from P4_2/mnm (#136) to P2_1/c (#14) with index 8, we can follow the path:

P4_2/mnm (#136) –[2]–> Cmmm (#65) –[2]–> Pmna (#53) –[2]–> P2_1/c (#14)

with the related indexes given in the brackets totaling to 2x2x2 = 8.

The problem I had today was to find possible paths going from G=Fd-3m (#227) to H=Cc (#9) with index [G:H] = 192.

I first parsed the subgroup list into an array with their indexes, then followed the possible paths.

<?PHP
/* Emre S. Tasci <exxx.txxxx@ehu.es>                    *
 * By parsing the possible subgroup paths obtained from 
 * SUBGROUPGRAPH, finds the paths that are compatible 
 * with the given terminal super & sub groups and the 
 * designated index.
 *
 *                                              06/06/11 */

# Input Data === 0 ====================================================
$start_sup = 227;
$crit_index = 192;
$end_sub = 9;

$arr = file("data.txt"); # A sample of data.txt for the case of #227->#9
                         # is included at the end of the code.

# Input Data === 1 ====================================================

$arr_subs = Array();
$arr_labels = Array();
foreach($arr as $line)
{
    $auxarr = preg_split("/[ \t]+/",trim($line));
    #echo $auxarr[2]."\n";
    $sup = $auxarr[1];
    $suplabel = $auxarr[2];
    $arrsubs = split(";",$auxarr[3]);
    $arr_labels[$sup] = $suplabel;
    foreach($arrsubs as $subind)
    {
        $auxarr2 = Array();
        preg_match("/([0-9]+)\[([0-9]+)\]/",$subind,$auxarr2);
        #print_r($auxarr2);
        $sub = $auxarr2[1];
        $index = $auxarr2[2];
        $arr_subs[$sup][$index][] = $sub;
    }
}
#print_r($arr_subs);

# Start exploring
$start_sup = sprintf("%03d",$start_sup);
$end_sub = sprintf("%03d",$end_sub);
$arr_paths = Array();
$arr_paths[$start_sup] = 1;

findpath($start_sup);

function findpath($current_sup)
{
    global $arr_paths,$arr_subs,$crit_index,$end_sub;
    #echo "*".$current_sup."*\n";
    if(strrpos($current_sup,"-") !== FALSE)
    {
        $current_sup_last_sup = substr($current_sup,strrpos($current_sup,"-")+1);
        $current_sup_last_sup = substr($current_sup_last_sup,0,strpos($current_sup_last_sup,"["));
    }
        
    else
        $current_sup_last_sup = $current_sup;
    #echo "*".$current_sup_last_sup."*\n";
    $subindexes = array_keys($arr_subs[$current_sup_last_sup]);
    foreach($subindexes as $subindex)
    {
        $subs = $arr_subs[$current_sup_last_sup][$subindex];
        echo $subindex.": ".join(",",$subs)."\n";
        foreach($subs as $sub)
        {
            echo $current_sup."-".$sub."[".$subindex."]"."\n";
            $arr_paths[$current_sup."-".$sub."[".$subindex."]"] = $arr_paths[$current_sup] * $subindex;
            if($arr_paths[$current_sup."-".$sub."[".$subindex."]"]<$crit_index)
                findpath($current_sup."-".$sub."[".$subindex."]");
            elseif($arr_paths[$current_sup."-".$sub."[".$subindex."]"] == $crit_index && $sub == $end_sub)
                echo "\nPath Found: ".$current_sup."-".$sub."[".$subindex."]"."\n\n";
        }
    }
    #print_r($subindexes);
}
print_r($arr_paths);

/*
    data.txt:
1   227   Fd-3m   141[3];166[4];203[2];216[2]
2   220   I-43d   122[3];161[4]
3   219   F-43c   120[3];161[4];218[4]
4   218   P-43n   112[3];161[4];220[4]
5   217   I-43m   121[3];160[4];215[2];218[2]
6   216   F-43m   119[3];160[4];215[4]
7   215   P-43m   111[3];160[4];216[2];217[4];219[2]
8   203   Fd-3   070[3]
9   167   R-3c   015[3];161[2];165[3];167[4];167[5];167[7]
10   166   R-3m   012[3];160[2];164[3];166[2];166[4];166[5];166[7];167[2]
11   165   P-3c1   015[3];158[2];163[3];165[3];165[4];165[5];165[7]
12   164   P-3m1   012[3];156[2];162[3];164[2];164[3];164[4];164[5];164[7];165[2]
13   163   P-31c   015[3];159[2];163[3];163[4];163[5];163[7];165[3];167[3]
14   162   P-31m   012[3];157[2];162[2];162[3];162[4];162[5];162[7];163[2];164[3];166[3]
15   161   R3c   009[3];158[3];161[4];161[5];161[7]
16   160   R3m   008[3];156[3];160[2];160[4];160[5];160[7];161[2]
17   159   P31c   009[3];158[3];159[3];159[4];159[5];159[7];161[3]
18   158   P3c1   009[3];158[3];158[4];158[5];158[7];159[3]
19   157   P31m   008[3];156[3];157[2];157[3];157[4];157[5];157[7];159[2];160[3]
20   156   P3m1   008[3];156[2];156[3];156[4];156[5];156[7];157[3];158[2]
21   141   I41/amd   070[2];074[2];088[2];109[2];119[2];122[2];141[3];141[5];141[7];141[9]
22   122   I-42d   043[2];122[3];122[5];122[7];122[9]
23   121   I-42m   042[2];111[2];112[2];113[2];114[2];121[3];121[5];121[7];121[9]
24   120   I-4c2   045[2];116[2];117[2];120[3];120[5];120[7];120[9]
25   119   I-4m2   044[2];115[2];118[2];119[3];119[5];119[7];119[9]
26   118   P-4n2   034[2];118[3];118[5];118[7];118[9];122[2]
27   117   P-4b2   032[2];117[2];117[3];117[5];117[7];117[9];118[2]
28   116   P-4c2   027[2];112[2];114[2];116[3];116[5];116[7];116[9]
29   115   P-4m2   025[2];111[2];113[2];115[2];115[3];115[5];115[7];115[9];116[2];121[2]
30   114   P-421c   037[2];114[3];114[5];114[7];114[9]
31   113   P-421m   035[2];113[2];113[3];113[5];113[7];113[9];114[2]
32   112   P-42c   037[2];112[3];112[5];112[7];112[9];116[2];118[2]
33   111   P-42m   035[2];111[2];111[3];111[5];111[7];111[9];112[2];115[2];117[2];119[2];120[2]
34   109   I41md   043[2];044[2];109[3];109[5];109[7];109[9]
35   088   I41/a   015[2];088[3];088[5];088[7];088[9]
36   074   Imma   012[2];015[2];044[2];046[2];051[2];052[2];053[2];062[2];074[3];074[5];074[7]
37   070   Fddd   015[2];043[2];070[3];070[5];070[7]
38   064   Cmce   012[2];014[2];015[2];036[2];039[2];041[2];053[2];054[2];055[2];056[2];057[2];060[2];061[2];062[2];064[3];064[5];064[7]
39   063   Cmcm   011[2];012[2];015[2];036[2];038[2];040[2];051[2];052[2];057[2];058[2];059[2];060[2];062[2];063[3];063[5];063[7]
40   062   Pnma   011[2];014[2];026[2];031[2];033[2];062[3];062[5];062[7]
41   061   Pbca   014[2];029[2];061[3];061[5];061[7]
42   060   Pbcn   013[2];014[2];029[2];030[2];033[2];060[3];060[5];060[7]
43   059   Pmmn   011[2];013[2];025[2];031[2];056[2];059[2];059[3];059[5];059[7];062[2]
44   058   Pnnm   010[2];014[2];031[2];034[2];058[3];058[5];058[7]
45   057   Pbcm   011[2];013[2];014[2];026[2];028[2];029[2];057[2];057[3];057[5];057[7];060[2];061[2];062[2]
46   056   Pccn   013[2];014[2];027[2];033[2];056[3];056[5];056[7]
47   055   Pbam   010[2];014[2];026[2];032[2];055[2];055[3];055[5];055[7];058[2];062[2]
48   054   Pcca   013[2];014[2];027[2];029[2];032[2];052[2];054[2];054[3];054[5];054[7];056[2];060[2]
49   053   Pmna   010[2];013[2];014[2];028[2];030[2];031[2];052[2];053[2];053[3];053[5];053[7];058[2];060[2]
50   052   Pnna   013[2];014[2];030[2];033[2];034[2];052[3];052[5];052[7]
51   051   Pmma   010[2];011[2];013[2];025[2];026[2];028[2];051[2];051[3];051[5];051[7];053[2];054[2];055[2];057[2];059[2];063[2];064[2]
52   046   Ima2   008[2];009[2];026[2];028[2];030[2];033[2];046[3];046[5];046[7]
53   045   Iba2   009[2];027[2];029[2];032[2];045[3];045[5];045[7]
54   044   Imm2   008[2];025[2];031[2];034[2];044[3];044[5];044[7]
55   043   Fdd2   009[2];043[3];043[5];043[7]
56   042   Fmm2   008[2];035[2];036[2];037[2];038[2];039[2];040[2];041[2];042[3];042[5];042[7]
57   041   Aea2   007[2];009[2];029[2];030[2];032[2];033[2];041[3];041[5];041[7]
58   040   Ama2   006[2];009[2];028[2];031[2];033[2];034[2];040[3];040[5];040[7]
59   039   Aem2   007[2];008[2];026[2];027[2];028[2];029[2];039[2];039[3];039[5];039[7];041[2];045[2];046[2]
60   038   Amm2   006[2];008[2];025[2];026[2];030[2];031[2];038[2];038[3];038[5];038[7];040[2];044[2];046[2]
61   037   Ccc2   009[2];027[2];030[2];034[2];037[3];037[5];037[7]
62   036   Cmc21   008[2];009[2];026[2];029[2];031[2];033[2];036[3];036[5];036[7]
63   035   Cmm2   008[2];025[2];028[2];032[2];035[2];035[3];035[5];035[7];036[2];037[2];044[2];045[2];046[2]
64   034   Pnn2   007[2];034[3];034[5];034[7];043[2]
65   033   Pna21   007[2];033[3];033[5];033[7]
66   032   Pba2   007[2];032[2];032[3];032[5];032[7];033[2];034[2]
67   031   Pmn21   006[2];007[2];031[2];031[3];031[5];031[7];033[2]
68   030   Pnc2   007[2];030[2];030[3];030[5];030[7];034[2]
69   029   Pca21   007[2];029[2];029[3];029[5];029[7];033[2]
70   028   Pma2   006[2];007[2];028[2];028[3];028[5];028[7];029[2];030[2];031[2];032[2];040[2];041[2]
71   027   Pcc2   007[2];027[2];027[3];027[5];027[7];030[2];037[2]
72   026   Pmc21   006[2];007[2];026[2];026[3];026[5];026[7];029[2];031[2];036[2]
73   025   Pmm2   006[2];025[2];025[3];025[5];025[7];026[2];027[2];028[2];035[2];038[2];039[2];042[2]
74   015   C2/c   009[2];013[2];014[2];015[3];015[5];015[7]
75   014   P21/c   007[2];014[2];014[3];014[5];014[7]
76   013   P2/c   007[2];013[2];013[3];013[5];013[7];014[2];015[2]
77   012   C2/m   008[2];010[2];011[2];012[2];012[3];012[5];012[7];013[2];014[2];015[2]
78   011   P21/m   006[2];011[2];011[3];011[5];011[7];014[2]
79   010   P2/m   006[2];010[2];010[3];010[5];010[7];011[2];012[2];013[2]
80   008   Cm   006[2];007[2];008[2];008[3];008[5];008[7];009[2]
81   007   Pc   007[2];007[3];007[5];007[7];009[2]
82   006   Pm   006[2];006[3];006[5];006[7];007[2];008[2]
83   009   Cc   007[2];009[3];009[5];009[7]
 */

When run, the code lists all the paths with the matching ones preceded by “Path Found”, so if you grep wrt it, you’ll have, for this example:

sururi@husniya:/xxx$ php find_trpath_for_index.php |grep Path|sed "s:Path Found\: ::"
227-141[3]-070[2]-015[2]-009[2]-007[2]-007[2]-009[2]
227-141[3]-070[2]-015[2]-013[2]-007[2]-007[2]-009[2]
227-141[3]-070[2]-015[2]-013[2]-013[2]-007[2]-009[2]
227-141[3]-070[2]-015[2]-013[2]-013[2]-015[2]-009[2]
227-141[3]-070[2]-015[2]-013[2]-014[2]-007[2]-009[2]
227-141[3]-070[2]-015[2]-014[2]-007[2]-007[2]-009[2]
227-141[3]-070[2]-015[2]-014[2]-014[2]-007[2]-009[2]
227-141[3]-070[2]-043[2]-009[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-008[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-008[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-008[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-008[2]-008[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-008[2]-008[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-008[2]-009[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-010[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-010[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-010[2]-012[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-010[2]-012[2]-015[2]-009[2]
227-141[3]-074[2]-012[2]-010[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-010[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-012[2]-011[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-011[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-011[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-008[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-008[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-012[2]-008[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-012[2]-015[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-012[2]-012[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-013[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-013[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-013[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-012[2]-013[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-014[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-014[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-015[2]-009[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-015[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-012[2]-015[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-012[2]-015[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-015[2]-009[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-015[2]-013[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-015[2]-013[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-015[2]-013[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-015[2]-013[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-015[2]-014[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-015[2]-014[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-008[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-008[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-008[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-008[2]-008[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-008[2]-008[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-008[2]-009[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-027[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-027[2]-037[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-028[2]-041[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-035[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-035[2]-036[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-035[2]-037[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-035[2]-045[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-035[2]-046[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-038[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-038[2]-040[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-038[2]-046[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-039[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-039[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-039[2]-041[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-039[2]-045[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-039[2]-046[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-042[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-042[2]-036[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-042[2]-037[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-042[2]-040[2]-009[2]
227-141[3]-074[2]-044[2]-025[2]-042[2]-041[2]-009[2]
227-141[3]-074[2]-044[2]-031[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-031[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-044[2]-031[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-031[2]-031[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-031[2]-033[2]-007[2]-009[2]
227-141[3]-074[2]-044[2]-034[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-008[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-008[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-046[2]-008[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-008[2]-008[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-008[2]-008[2]-008[2]-009[2]
227-141[3]-074[2]-046[2]-008[2]-009[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-009[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-029[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-031[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-026[2]-036[2]-008[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-028[2]-041[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-029[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-030[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-031[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-032[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-028[2]-041[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-030[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-030[2]-030[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-030[2]-034[2]-007[2]-009[2]
227-141[3]-074[2]-046[2]-030[2]-034[2]-043[2]-009[2]
227-141[3]-074[2]-046[2]-033[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-010[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-010[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-010[2]-012[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-010[2]-012[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-010[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-010[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-011[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-011[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-011[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-013[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-013[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-013[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-013[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-027[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-027[2]-037[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-028[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-035[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-035[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-035[2]-037[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-035[2]-045[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-035[2]-046[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-038[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-038[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-038[2]-046[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-039[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-039[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-039[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-039[2]-045[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-039[2]-046[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-042[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-042[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-042[2]-037[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-042[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-025[2]-042[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-029[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-031[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-026[2]-036[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-006[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-006[2]-008[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-007[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-028[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-029[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-030[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-031[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-032[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-028[2]-041[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-028[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-063[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-063[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-063[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-064[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-064[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-051[2]-064[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-028[2]-041[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-030[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-053[2]-031[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-027[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-027[2]-037[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-029[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-054[2]-032[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-055[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-055[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-055[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-055[2]-032[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-013[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-013[2]-015[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-014[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-026[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-026[2]-036[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-028[2]-007[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-028[2]-040[2]-009[2]
227-141[3]-074[2]-051[2]-057[2]-028[2]-041[2]-009[2]
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Nature has a very nice section called the Futures in where they publish very short (1 page at most) science fiction stories.

I started writing stories long before I started writing scientific articles and had this story of mine, “The Most Beautiful Sun of Our Earth” written some 9 years ago (in Turkish). Last week, the idea to re-write/revise it in English and submit it to the Futures occurred to me, so on an insomniatic night (or whatever is the correct English term), I sat down in front of the word processor and pulled it out.

The original story had me and -my then girlfriend- Bengü as the protagonists but I felt that it would be too selfish so, I “borrowed” my dear friend (my battalion as we call it), Andy and his girlfriend Serene for the part. The following day I asked Andy’s permission for the inclusion and also his help to edit this English version of the story, which he kindly accepted.

At the end, I submitted the story to Nature and from the tone of this entry most probably you’ll think that it was accepted for publication and hoorraay and all that but no, yesterday, I got a reply stating that, it wasn’t accepted and that’s it.

The good thing coming out of this is that, Andy actually liked the story very much and this story being one of my favorite SF stories, I’m really happy for it. So, if you’re still interested, you can get a copy of it, completely free from any possible obligations to Nature publishing were it to have been otherwise.. 8)

Emre S. Tasci – “The Most Beautiful Sun of Our Earth”